NCBI Entrez Programming Utilities (E-utilities) 教程收藏

Posted on 16 四月 2009 by 柳城 ,阅读 541

近来发现了NCBIE-utilities软件,不可思议的程序。实现自动化的大批量的从Entrez数据库下载数据。并且提供了几种常用的语言以供选择,像Perl, Python, Java, 和 C++等。真是太强大了。也挺复杂的。先收藏教程,再慢慢学习吧。
E-utilities:automate search and retrieval operations across the entire suite of Entrez databases.

Course Objectives
During the course, participants will learn how to do the following:

  • Post E-utility calls using standard URLs in Perl and using SOAP in Visual C#
  • Design and execute complex searches across the 35 Entrez databases
  • Implement data pipelines for genomic, proteomic, or microarray analysis
  • Create automated searches to keep local databases current
  • Create and download customized datasets
  • Seamlessly combine local data with NCBI data
  • Develop a focused interface to NCBI data

教程一:http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=coursework&part=eutils

教程二:http://www.ncbi.nlm.nih.gov/Class/PowerTools/eutils/schedule.html

Course Schedule:

 Tuesday, January 29

Time Event Description
09:00 - 10:15 Lecture 1 Introduction to Entrez
10:15 - 10:30 Break  
10:30 - 12:30 Practical 1 Exploring Entrez Pipelines
12:30 - 13:30 Lunch Natcher Cafeteria
13:30 - 14:30 Lecture 2 Introduction to the E-utilities
14:30 - 15:00 Practical 2 Exploring the E-utilities with E-Bench
15:00 - 15:15 Break  
15:15 - 16:00 Lecture 3 The Four Basic Pipelines
16:00 - 17:00 Practical 3 Coding Basic Pipelines

 Wednesday, January 30

Time Event Description
09:00 - 11:15 Lecture/Practical 4 Complex Pipelines: Entrez Linking
11:15 - 11:30 Break  
11:30 - 12:30 Lecture/Practical 5 Accessing LinkOuts
12:30 - 13:30 Lunch Natcher Cafeteria
13:30 - 15:00 Lecture/Practical 6 ESearch Special Topics: Entrez Filtering
15:00 - 15:15 Break  
15:15 - 17:00 Lecture/Practical 7 ESearch Special Topics: Dates and Accessions

 Thursday, January 31

Time Event Description
09:00 - 12:30 Practical 8 Coding an Advanced E-utility Application
12:30 - 13:30 Lunch Natcher Cafeteria
13:30 - 14:30 Lecture 9 Introduction to the SOAP Interface
14:30 - 14:45 Break  
14:45 - 17:00 Practical 9 Using the E-utilities with SOAP

 Friday, February 1

Time Event Description
09:00 - 10:30 Discussion 1 Meet the Developers
10:30 - 10:45 Break  
10:45 - 11:15 Discussion 2 Usage Guidelines for the E-utilities
11:15 - 12:00 Tour Tour of NCBI
12:00 - 13:00 Lunch Natcher Cafeteria
13:00 - 17:00 Open Lab Individual Consultations

 

最新的说明文档:http://eutils.ncbi.nlm.nih.gov/entrez/query/static/eutils_help.html

转载请注明 : 来源于 NCBI Entrez Programming Utilities (E-utilities) 教程收藏 | 柳城

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2条评论 于 “NCBI Entrez Programming Utilities (E-utilities) 教程收藏”

  1. liuld liuld Says:

    对NCBI 的 E-utilities我们有共同的兴趣,我们医脉通网站的Pubmed检索就是用E-utilities
    实现的
    http://www.medlive.cn/pro/pubmed/
    有时间欢迎给我们提提意见

    [回复]

    O型天蝎座
    O型天蝎座 回复:

    厉害哦。如果能让我学习一下源代码就非常不错了,嘿嘿~~

    [回复]

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