Sequence Scanner Software v1.0


Sequence Scanner,显示分析ABI基因分析仪DNA图谱数据软件。

Sequence Scanner Software v1.0 allows users to view, print and export sequencing sample files generated using Applied Biosystems genetic analyzer instruments. This software will also enable users to edit bases, manually trim a sequence read and generate reports. Base calling and auto-trimming features are not supported in Sequence Scanner Software.

This software reads .ab1 files generated from ABI PRISM 310, 377, 3700 DNA Analyzer and Applied Biosystems 3100-Avant, 3100, 3130/3130xl and 3730/3730xl systems.

Features in Sequence Scanner Software v1.0

Import Traces

      – Traces can be imported via drag and drop, double clicking on file and the “Import Traces” dialog.

Display Traces

       – Traces listed in a tabular format with several display categories.

      – Traces can be viewed as thumbnails.

  o Thumbnails display raw data and can be scaled uniformly or individually.

      – Traces can be sorted by a variety of categories within both the tabular or thumbnail formats.

      – Traces can be viewed individually or as a group.

  o Multiple traces can be displayed by tiling individual trace viewers in 2×2, 3×1, 2×1 and 1×2 modes.

       – Analyzed and raw data can be displayed simultaneously with the ability to nudge the raw data in either direction to align with the analyzed data.

       – Dynamic zooming by dragging the mouse over a range of interest.

Export Traces

       – Traces can be exported in .txt, .seq, .scf, jpeg, pdf, .qual, .fsta and .phd.1 file formats.

       – Traces can be exported with only the post-trim sequence information to .seq, .fsta and .qual files.

Print Traces

     – Print preview capability for traces

      – Printing of the analyzed, annotation and sequence views within traces

      – Configurable trace printout settings

Edit Traces

      – Edit, delete, insert bases with undo and redo support

      – Add or remove bases to be included in the post-trim sequence

Report Results

      – Sequence Scanner provides seven reports for the imported trace files: Quality Control, Plate, Trace Score, CRL (Continuous Read Length), CRL Distribution, QV20+, and Signal Strength.

      – Data points within the reports are hyperlinked back to the trace files to open them in the trace viewer

      – Report settings are configurable

      – Print previews are available for all reports

      – Reports can also be exported in .pdf, .html, .txt and .xls formats.

User Preferences

      – Configurable thresholds for low, medium and high Trace Scores and Continuous Read Length metrics

      – Configurable color for Quality Values, Trace Scores and Continuous Read Lengths

Miscellaneous

       – Import traces dialog will always map to the last-used folder location between sessions

DownLoad

Thank you for your interest in Sequence Scanner Software v1.0. Please click here to get the software now (62.8MB). Click here to view the sequence scanner software readme file.

Please be advised that the software download may require a longer time, depending on your network and system configurations.


一条回应:“Sequence Scanner Software v1.0”

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